Geffy said:
X-Istence: which ports have they moved around?
PHP primarily, which is what caused the delay:
cd /usr/ports/lang/php5
make deinstall clean rmconfig config all install
Make sure to select the Apache knob so that it installs the Apache module, then portupgrade -Rr php5\*
Then do what you normally do. It is also mentioned in /usr/ports/UPDATING, not that I pay attention to that file

. That also caused the problem of bare PHP code being shown to users, which is not what I wanted, but it was all because the Apache module was not compiled and installed after I did the portupgrade. Go figure
Some others have had paramaters changed, and awstats for example is marked as broken, which caused portupgrade to freak out until I updated that to a later version so it skips all ports marked as broken.